L carnitine supplements can cause a fishy odor in the breath, sweat, and urine. This is likely due to the formation of trimethylamine (TMA). TMA is also responsible for the pungent smell of L carnitine: what is it, health benefits and side effects Did You Know? Some people report a fishy smell after supplementing with L carnitine. This happens because certain gut bacteria convert carnitine to trimethylamine, a malodorous compound found in rotting fish. Acetyl L Carnitine Supplement: Uses, Benefits, Side Effects, Dosage, A Welltopia Pharmacy